Thanks gents!
I had a check of the brushes and the we contacting. Having sand blasted the body and fitted new brushes I was hoping it wouldn't be that.
I let the anger subside and today I bench tested with a light, and when spinning there was a point when the light when out. And when I spun it with a cordless drill I could hear a clicking noise. After pulling it apart I found where I had soldered the rotor wires to the slip rings Id left a raised edge causing the brush to jump. Just to be sure I put a different rotor in and all was cured. Lesson learnt, be more careful when soldering!
So a trip to the lathe at work tomorrow to make the slip rings concentric again should see me with a lovely next to brand new alternator for under £30
